Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs10747556 | chr12:49308284 | A/G | 0.000308 | 489 | 16.8 | 16.2 | 13.77 | KM Plot |
| THCA | rs10752275 | chr10:12800715 | A/G | 1.11E-7 | 490 | 11.67 | 13.93 | 16.67 | KM Plot |
| THCA | rs10753530 | chr1:22455314 | A/G | 4.73E-7 | 478 | 15.17 | 18.55 | 6.87 | KM Plot |
| THCA | rs10753745 | chr1:166857461 | A/C | 0.000224 | 486 | 22.7 | 16.37 | 15.17 | KM Plot |
| THCA | rs10761137 | chr9:94728959 | A/G | 3.59E-5 | 490 | 12.5 | 15.08 | 16.63 | KM Plot |
| THCA | rs1076680 | chr1:22458384 | C/T | 2.85E-7 | 473 | 15.63 | 18.2 | 6.72 | KM Plot |
| THCA | rs10767844 | chr11:4156661 | G/A | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10767849 | chr11:4160641 | C/T | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10767850 | chr11:4160657 | T/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10767851 | chr11:4161128 | G/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10767853 | chr11:4163292 | G/A | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10767854 | chr11:4163495 | C/T | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10767855 | chr11:4163923 | A/G | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10767856 | chr11:4164034 | C/T | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10767857 | chr11:4167889 | A/G | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |